Gates et al., 1999 - A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences. Genome research   9(4):334-347 Full text @ Genome Res.
169 Genes / Markers
Marker Type Symbol Name
Gene acvr1ba activin A receptor type 1Ba
Gene acvr2aa activin A receptor type 2Aa
Gene apoa1a apolipoprotein A-Ia
Gene ascl1a achaete-scute family bHLH transcription factor 1a
Gene b2m beta-2-microglobulin
Gene bmp2a bone morphogenetic protein 2a
Gene bmp2b bone morphogenetic protein 2b
Gene bmp4 bone morphogenetic protein 4
Gene cahz carbonic anhydrase
Gene ccnd1 cyclin D1
Gene ccne1 cyclin E1
Gene cdc27 cell division cycle 27
Gene cdh11 cadherin 11, type 2, OB-cadherin (osteoblast)
Gene cdx4 caudal type homeobox 4
Gene cfb complement factor B
Gene chrd chordin
Gene chrna1 cholinergic receptor, nicotinic, alpha 1 (muscle)
Gene clns1a chloride channel, nucleotide-sensitive, 1A
Gene col2a1a collagen, type II, alpha 1a
Gene cse1l CSE1 chromosome segregation 1-like (yeast)
Gene csnk2a1 casein kinase 2, alpha 1 polypeptide
Gene csnk2a2a casein kinase 2, alpha prime polypeptide a
Gene csnk2b casein kinase 2, beta polypeptide
Gene ctnnb1 catenin (cadherin-associated protein), beta 1
Gene cyp19a1a cytochrome P450, family 19, subfamily A, polypeptide 1a
Gene ddx3xb DEAD-box helicase 3 X-linked b
Gene ddx4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
Gene desma desmin a
Gene dharma dharma
Gene dla deltaA
Gene dlb deltaB
Gene dlx1a distal-less homeobox 1a
Gene dlx2a distal-less homeobox 2a
Gene dlx2b distal-less homeobox 2b
Gene dlx3b distal-less homeobox 3b
Gene dlx4a distal-less homeobox 4a
Gene dlx4b distal-less homeobox 4b
Gene dlx6a distal-less homeobox 6a
Gene dtymk deoxythymidylate kinase (thymidylate kinase)
Gene egr1 early growth response 1
Gene egr2b early growth response 2b
Gene elavl3 ELAV like neuron-specific RNA binding protein 3
Gene en1a engrailed homeobox 1a
Gene en2a engrailed homeobox 2a
Gene en2b engrailed homeobox 2b
Gene eve1 even-skipped-like1
Gene evx2 even-skipped homeobox 2
Gene fgf3 fibroblast growth factor 3
Gene fgfr4 fibroblast growth factor receptor 4
Gene foxa2 forkhead box A2
Gene foxa3 forkhead box A3
Gene foxb1a forkhead box B1a
Gene foxn4 forkhead box N4
Gene gap43 growth associated protein 43
Gene gata1a GATA binding protein 1a
Gene gata2a GATA binding protein 2a
Gene gdf5 growth differentiation factor 5
Gene gdf6a growth differentiation factor 6a
Gene gdf6b growth differentiation factor 6b
Gene gjc4b gap junction protein gamma 4b
Gene gsc goosecoid
Gene hbaa1 hemoglobin, alpha adult 1
Gene hbae1.1 hemoglobin, alpha embryonic 1.1
Gene hbba1 hemoglobin, beta adult 1
Gene her1 hairy-related 1
Gene her4.1 hairy-related 4, tandem duplicate 1
Gene her6 hairy-related 6
Gene hesx1 HESX homeobox 1
Gene hoxb5a homeobox B5a
Gene hoxc5a homeobox C5a
Gene hoxd4a homeobox D4a
Gene hspa8 heat shock protein 8
Gene ihhb Indian hedgehog signaling molecule b
Gene inhbb inhibin subunit beta B
Gene isl1a ISL LIM homeobox 1a
Gene isl2a ISL LIM homeobox 2a
Gene itk IL2 inducible T cell kinase
Gene jak1 Janus kinase 1
Gene kdrl kinase insert domain receptor like
Gene l1camb L1 cell adhesion molecule, paralog b
Gene lhx1a LIM homeobox 1a
Gene lhx1b LIM homeobox 1b
Gene lhx3 LIM homeobox 3
Gene lmo2 LIM domain only 2 (rhombotin-like 1)
Gene mafba MAF bZIP transcription factor Ba
Gene map3k4 mitogen-activated protein kinase kinase kinase 4
Gene mapk12a mitogen-activated protein kinase 12a
Gene mef2ca myocyte enhancer factor 2ca
Gene mef2d myocyte enhancer factor 2d
Gene melk maternal embryonic leucine zipper kinase
Gene msx1a muscle segment homeobox 1a
Gene msx1b muscle segment homeobox 1b
Gene msx2b muscle segment homeobox 2b
Gene msx3 muscle segment homeobox 3
Gene mtnr1aa melatonin receptor 1A a
Gene mtnr1ba melatonin receptor type 1Ba
Gene myca MYC proto-oncogene, bHLH transcription factor a
Gene myod1 myogenic differentiation 1
Gene ndr1 nodal-related 1
Gene neurog1 neurogenin 1
Gene nkx2.2a NK2 homeobox 2a
Gene nkx2.3 NK2 homeobox 3
Gene nkx2.5 NK2 homeobox 5
Gene nkx2.7 NK2 transcription factor related 7
Gene nr2f1a nuclear receptor subfamily 2, group F, member 1a
Gene nr2f5 nuclear receptor subfamily 2, group F, member 5
Gene ntn1a netrin 1a
Gene ntn1b netrin 1b
Gene oprd1a opioid receptor, delta 1a
Gene otx1 orthodenticle homeobox 1
Gene otx2b orthodenticle homeobox 2b
Gene pax2a paired box 2a
Gene pax3a paired box 3a
Gene pax6a paired box 6a
Gene pax9 paired box 9
Gene pcmt protein-L-isoaspartate (D-aspartate) O-methyltransferase
Gene pdgfra platelet-derived growth factor receptor, alpha polypeptide
Gene pla2g4aa phospholipase A2, group IVAa (cytosolic, calcium-dependent)
Gene pou3f2a POU class 3 homeobox 2a
Gene pou3f2b POU class 3 homeobox 2b
Gene pou3f3a POU class 3 homeobox 3a
Gene pou5f3 POU domain, class 5, transcription factor 3
Gene pou6f1 POU class 6 homeobox 1
Gene prim1 DNA primase subunit 1
Gene prph peripherin
Gene ptch2 patched 2
Gene raf1a Raf-1 proto-oncogene, serine/threonine kinase a
Gene rag1 recombination activating 1
Gene ran RAN, member RAS oncogene family
Gene raraa retinoic acid receptor, alpha a
Gene rarab retinoic acid receptor, alpha b
Gene rarga retinoic acid receptor gamma a
Gene rcp redcone pigment
Gene ret ret proto-oncogene receptor tyrosine kinase
Gene rho rhodopsin
Gene rrm1 ribonucleotide reductase M1 polypeptide
Gene rx2 retinal homeobox gene 2
Gene rxrba retinoid x receptor, beta a
Gene rxrga retinoid x receptor, gamma a
Gene serpinh1b serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b
Gene shha sonic hedgehog signaling molecule a
Gene smad2 SMAD family member 2
Gene smad4a SMAD family member 4a
Gene smad5 SMAD family member 5
Gene snai1a snail family zinc finger 1a
Gene snai1b snail family zinc finger 1b
Gene snap25a synaptosome associated protein 25a
Gene snap25b synaptosome associated protein 25b
Gene sox19a SRY-box transcription factor 19a
Gene stil STIL centriolar assembly protein
Gene stom stomatin
Gene tbx16l T-box transcription factor 16, like
Gene tbxta T-box transcription factor Ta
Gene tcf7l1a transcription factor 7 like 1a
Gene tefa TEF transcription factor, PAR bZIP family member a
Gene tfa transferrin-a
Gene thraa thyroid hormone receptor alpha a
Gene tncb tenascin Cb
Gene tnn tenascin N
Gene tpt1 tumor protein, translationally-controlled 1
Gene twist2 twist2
Gene wnt1 wingless-type MMTV integration site family, member 1
Gene wnt10a wingless-type MMTV integration site family, member 10a
Gene wnt10b wingless-type MMTV integration site family, member 10b
Gene wnt11 wingless-type MMTV integration site family, member 11
Gene wnt2 wingless-type MMTV integration site family member 2
Gene wnt4 wingless-type MMTV integration site family, member 4
Gene wnt8a wingless-type MMTV integration site family, member 8a
Gene wt1a WT1 transcription factor a
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