Lee et al., 2020 - Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility. Genome biology   21:52 Full text @ Genome Biol.
68 Genes / Markers
Marker Type Symbol Name
Gene actl6a actin-like 6A
Gene ak5l adenylate kinase 5, like
Gene atp5mc3a ATP synthase membrane subunit c locus 3a
Gene bmp2a bone morphogenetic protein 2a
Gene cdc42ep3 CDC42 effector protein (Rho GTPase binding) 3
Gene chst3b carbohydrate (chondroitin 6) sulfotransferase 3b
Gene col11a1a collagen, type XI, alpha 1a
Gene col11a2 collagen, type XI, alpha 2
Gene ctsla cathepsin La
Gene cygb1 cytoglobin 1
Gene dachc dachshund c
Gene dnajc17 DnaJ (Hsp40) homolog, subfamily C, member 17
Gene eeig1a estrogen-induced osteoclastogenesis regulator 1a
Enhancer en.-102runx1 enhancer 102kb upstream of runx1
Enhancer en.-120rmb7 enhancer 120kb upstream of rmb7
Enhancer en.-138dnajc17 enhancer 138 kb upstream of dnajc17
Enhancer en.-13cygb1 enhancer 13kb upstream of cygb1
Enhancer en.-13rasl11a enhancer 13kb upstream of rasl11a
Enhancer en.-23grip2a enhancer 23kb upstream of grip2a
Enhancer en.-2igflr1 enhancer 2kb upstream of igflr1
Enhancer en.-2lef1 enhancer 2kb upstream of lef1
Enhancer en.-6mitd1 enhancer 6k upstream of mitd1
Enhancer en.-7col11a2 enhancer 7kb upstream of col11a2
Enhancer en.-8pdgfab enhancer 8kb upstream of pdgfab
Enhancer en.11kfam102aa enhancer 11kb downstream of fam102aa
Enhancer en.120prdm5 enhancer 120kb downstream prdm5
Enhancer en.138fhod3b enhancer 138kb downstream of fhod3b
Enhancer en.17fbln1 enhancer 17kb downstream of fbln1
Enhancer en.2cdc42ep3 enhancer 2kb downstream of cdc42ep3
Enhancer en.2mef2aa enhancer 2k downstream of mef2aa
Enhancer en.31mtnr1aa enhancer 31kb downstream of mtnr1aa
Enhancer en.3swap70b enhancer 3kb downstream swap70b
Enhancer en.43bmp2a enhancer 43k downstream of bmp2a
Enhancer en.5chst3b enhancer 5kb downstream of chst3b
Enhancer en.6col11a1a enhancer 6kb upstream col11a1a
Enhancer en.6prdm1c enhancer 6kb downstream prdm1c
Enhancer en.87frmd4a enhancer 87kb downstream of frmd4a
Enhancer en.9ptk2aa enhancer 9kb downstream of ptk2aa
Enhancer en.zrs ZPA regulatory sequence
Gene fbln1 fibulin 1
Gene fgf20a fibroblast growth factor 20a
Gene fhod3b formin homology 2 domain containing 3b
Gene fosl1a FOS like 1, AP-1 transcription factor subunit a
Gene fosl1b FOS like 1, AP-1 transcription factor subunit b
Gene frmd4a FERM domain containing 4A
Gene grip2a glutamate receptor interacting protein 2a
Gene hsp70l heat shock cognate 70-kd protein, like
Gene igflr1 IGF-like family receptor 1
Gene inhbab inhibin subunit beta Ab
Gene lef1 lymphoid enhancer-binding factor 1
Gene lepb leptin b
Gene lmbr1 limb development membrane protein 1
Gene lnpa limb and neural patterns a
Gene mef2aa myocyte enhancer factor 2aa
Gene mitd1 MIT, microtubule interacting and transport, domain containing 1
Gene mmp13b matrix metallopeptidase 13b
Gene myl7 myosin, light chain 7, regulatory
Gene pdgfab platelet-derived growth factor alpha polypeptide b
Gene prdm5 PR domain containing 5
Gene ptk2aa protein tyrosine kinase 2aa
Gene rasl11a RAS-like, family 11, member A
Gene rbm7 RNA binding motif protein 7
Gene runx1 RUNX family transcription factor 1
Gene six3b SIX homeobox 3b
Gene swap70b switching B cell complex subunit SWAP70b
Gene tph1b tryptophan hydroxylase 1b
Gene wnt3 wingless-type MMTV integration site family, member 3
Gene zgc:173726 zgc:173726