Sanger(Havana Group) and ZFIN Staff - Manual Annotation of the zebrafish genome. Manually curated data
263 Genes / Markers
Marker Type Symbol Name
Gene abca3b ATP-binding cassette, sub-family A (ABC1), member 3b
Gene abca4b ATP-binding cassette, sub-family A (ABC1), member 4b
Gene abcc1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1
Gene abcd1 ATP-binding cassette, sub-family D (ALD), member 1
Gene abcd4 ATP-binding cassette, sub-family D (ALD), member 4
Gene ablim1b actin binding LIM protein 1b
Gene acap3a ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a
Gene aclyb ATP citrate lyase b
Gene actl6b actin-like 6B
Gene adap2 ArfGAP with dual PH domains 2
Gene adarb2 adenosine deaminase RNA specific B2 (inactive)
Gene aff2 AF4/FMR2 family, member 2
Gene agbl4 AGBL carboxypeptidase 4
Gene allc allantoicase
Gene amot angiomotin
Gene ank3b ankyrin 3b
Gene ap2a1 adaptor related protein complex 2 subunit alpha 1
Gene arhgap21a Rho GTPase activating protein 21a
Gene arhgef2 rho/rac guanine nucleotide exchange factor (GEF) 2
Gene arpin actin related protein 2/3 complex inhibitor
Gene arrdc3a arrestin domain containing 3a
Gene atp2a1l ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like
Gene atp8b4 ATPase phospholipid transporting 8B4
Gene bach2b BTB and CNC homology 1, basic leucine zipper transcription factor 2b
Gene bbof1 basal body orientation factor 1
Gene bcl11ba BAF chromatin remodeling complex subunit BCL11B a
Gene bglap bone gamma-carboxyglutamate (gla) protein
Gene btr04 bloodthirsty-related gene family, member 4
Gene btr21 bloodthirsty-related gene family, member 21
Gene c1qbp complement component 1, q subcomponent binding protein
Gene c2cd5 C2 calcium dependent domain containing 5
Gene c4b complement 4B (Chido blood group)
Gene ca4c carbonic anhydrase IV c
Gene ca10a carbonic anhydrase Xa
Gene cactin cactin
Gene calcr calcitonin receptor
Gene carmil2 capping protein regulator and myosin 1 linker 2
Gene cast calpastatin
Gene cbx6b chromobox homolog 6b
Gene ccdc25 coiled-coil domain containing 25
Gene ccdc141 coiled-coil domain containing 141
Gene ccl20a.3 chemokine (C-C motif) ligand 20a, duplicate 3
Gene ccl38.6 chemokine (C-C motif) ligand 38, duplicate 6
Gene ccr12b.1 chemokine (C-C motif) receptor 12b, tandem duplicate 1
Gene cd79b CD79b molecule, immunoglobulin-associated beta
Gene cdc42ep1a CDC42 effector protein (Rho GTPase binding) 1a
Gene celsr2 cadherin, EGF LAG seven-pass G-type receptor 2
Gene cep43 centrosomal protein 43
Gene chd1 chromodomain helicase DNA binding protein 1
Gene cngb3.1 cyclic nucleotide gated channel subunit beta 3, tandem duplicate 1
Gene cntln centlein, centrosomal protein
Gene col19a1 collagen, type XIX, alpha 1
Gene cox6b2 cytochrome c oxidase subunit 6B2
Gene cpamd8 C3 and PZP like alpha-2-macroglobulin domain containing 8
Gene creb5b cAMP responsive element binding protein 5b
Gene crebbpb CREB binding protein b
Gene crip1 cysteine-rich protein 1
Gene crp2 C-reactive protein 2
Gene cry5 cryptochrome circadian regulator 5
Gene crygm2d10 crystallin, gamma M2d10
Gene csmd3a CUB and Sushi multiple domains 3a
Gene cxcr5 chemokine (C-X-C motif) receptor 5
Gene cyp2k19 cytochrome P450, family 2, subfamily k, polypeptide 19
Gene cyp11a2 cytochrome P450, family 11, subfamily A, polypeptide 2
Gene dctn4 dynactin 4
Gene ddx1 DEAD (Asp-Glu-Ala-Asp) box helicase 1
Gene dennd2c DENN/MADD domain containing 2C
Gene dmxl2 Dmx-like 2
Gene dock3 dedicator of cytokinesis 3
Gene dync1i2a dynein, cytoplasmic 1, intermediate chain 2a
Gene ebf1a EBF transcription factor 1a
Gene ecpas Ecm29 proteasome adaptor and scaffold
Gene eda ectodysplasin A
Gene eif4h eukaryotic translation initiation factor 4h
Gene epcam epithelial cell adhesion molecule
lincRNA Gene erv endogenous retrovirus
Gene fam20cb FAM20C golgi associated secretory pathway kinase b
Gene fam49bb family with sequence similarity 49 member Bb
Gene fastkd1 FAST kinase domains 1
Gene fgf11b fibroblast growth factor 11b
Gene frmpd2 FERM and PDZ domain containing 2
Gene ftr26 finTRIM family, member 26
Pseudogene ftr39p finTRIM family, member 39, pseudogene
Pseudogene ftr52p finTRIM family, member 52, pseudogene
Gene ftr58 finTRIM family, member 58
Gene ftr59 finTRIM family, member 59
Gene ftr60 finTRIM family, member 60
Gene gabrb2a gamma-aminobutyric acid type A receptor subunit beta2a
Gene gabrd gamma-aminobutyric acid type A receptor subunit delta
Gene gatb glutamyl-tRNA(Gln) amidotransferase, subunit B
Gene gdpd3b glycerophosphodiester phosphodiesterase domain containing 3b
Gene gjb10 gap junction protein beta 10
Gene gpc6a glypican 6a
Gene gphb5 glycoprotein hormone subunit beta 5
Gene gpr108 G protein-coupled receptor 108
Gene gpr156 G protein-coupled receptor 156
Gene greb1l GREB1 like retinoic acid receptor coactivator
Gene grinaa glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1a (glutamate binding)
Gene grip2a glutamate receptor interacting protein 2a
Gene grm6a glutamate receptor, metabotropic 6a
Gene gtf2ird1 GTF2I repeat domain containing 1
Gene gulp1b GULP PTB domain containing engulfment adaptor 1b
Gene hcfc2 host cell factor C2
Gene her4.2 hairy-related 4, tandem duplicate 2
Gene hmga1a high mobility group AT-hook 1a
Gene hmgb1b high mobility group box 1b
Gene hnrnpm heterogeneous nuclear ribonucleoprotein M
Gene igsf9ba immunoglobulin superfamily, member 9Ba
Gene impg2a interphotoreceptor matrix proteoglycan 2a
Gene impg2b interphotoreceptor matrix proteoglycan 2b
Gene isg15 ISG15 ubiquitin like modifier
Gene itga2b integrin, alpha 2b
Gene itgam.2 integrin, alpha M (complement component 3 receptor 3 subunit), tandem duplicate 2
Gene itih3b.2 inter-alpha-trypsin inhibitor heavy chain 3b, tandem duplicate 2
Gene kansl1a KAT8 regulatory NSL complex subunit 1a
Gene kaznb kazrin, periplakin interacting protein b
Gene kcnh5b potassium voltage-gated channel, subfamily H (eag-related), member 5b
Gene kdm4aa lysine (K)-specific demethylase 4A, genome duplicate a
Gene khdc4 KH domain containing 4, pre-mRNA splicing factor
Gene kif21a kinesin family member 21A
Gene kif26bb kinesin family member 26Bb
Gene kirrel3l kirre like nephrin family adhesion molecule 3, like
Gene klf11b Kruppel-like factor 11b
Gene kmt2ca lysine (K)-specific methyltransferase 2Ca
Gene lhfpl4a LHFPL tetraspan subfamily member 4a
Gene lonrf1 LON peptidase N-terminal domain and ring finger 1
Gene lrp1ba low density lipoprotein receptor-related protein 1Ba
Gene lrrc32 leucine rich repeat containing 32
Gene lyplal1 lysophospholipase like 1
Gene map3k20b mitogen-activated protein kinase kinase kinase 20b
Gene map4k3a mitogen-activated protein kinase kinase kinase kinase 3a
Gene mapkap1 MAPK associated protein 1
Gene mark3b MAP/microtubule affinity-regulating kinase 3b
Gene mat2aa methionine adenosyltransferase II, alpha a
Gene mat2b methionine adenosyltransferase II, beta
Gene megf8 multiple EGF-like-domains 8
Gene mettl17 methyltransferase like 17
Gene mhc1uca major histocompatibility complex class I UCA
Gene mhc1zga major histocompatibility complex class I ZGA
Gene mhc1zia major histocompatibility complex class I ZIA
Gene mhc1zja major histocompatibility complex class I ZJA
Gene mhc2dbb major histocompatibility complex class II DBB gene
Gene mia3 MIA SH3 domain ER export factor 3
Gene mical3b microtubule associated monooxygenase, calponin and LIM domain containing 3b
Gene micall1b.2 MICAL like 1b, duplicate 2
Gene mmp25a matrix metallopeptidase 25a
Gene mtmr3 myotubularin related protein 3
Gene mvb12a multivesicular body subunit 12A
Gene mylkb myosin light chain kinase b
Gene ndp norrin cystine knot growth factor NDP
Gene nedd4a NEDD4 E3 ubiquitin protein ligase a
Gene neu3.4 sialidase 3 (membrane sialidase), tandem duplicate 4
Gene neu3.5 sialidase 3 (membrane sialidase), tandem duplicate 5
Gene neurl1b neuralized E3 ubiquitin protein ligase 1B
Gene nfatc4 nuclear factor of activated T cells 4
Gene ngef neuronal guanine nucleotide exchange factor
Gene nisch nischarin
Gene nme2a NME/NM23 nucleoside diphosphate kinase 2a
Gene nphp4 nephronophthisis 4
Gene npy1r neuropeptide Y receptor Y1
Gene npy8ar neuropeptide Y receptor Y8a
Gene ntan1 N-terminal asparagine amidase
Gene ntng2b netrin g2b
Gene ntrk2a neurotrophic tyrosine kinase, receptor, type 2a
Gene olfcd1 olfactory receptor C family, d1
Gene olfcd3 olfactory receptor C family, d3
Gene or61c3 odorant receptor, family 61, subfamily C, member 3
Gene or71al2 odorant receptor, family 71, subfamily AL, member 2
Gene otud4 OTU deubiquitinase 4
Gene pdxkb pyridoxal (pyridoxine, vitamin B6) kinase b
Gene pear1 platelet endothelial aggregation receptor 1
Gene pip5k1ca phosphatidylinositol-4-phosphate 5-kinase, type I, gamma a
Gene plch2a phospholipase C, eta 2a
Gene postna periostin, osteoblast specific factor a
Gene ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha
Gene prf1.2 perforin 1.2
Gene prf1.8 perforin 1.8
Gene prkcg protein kinase C, gamma
Gene proca protein C (inactivator of coagulation factors Va and VIIIa), a
Gene prr33 proline rich 33
Gene ptbp2b polypyrimidine tract binding protein 2b
Gene pttg1 PTTG1 regulator of sister chromatid separation, securin
Gene rapgef5b Rap guanine nucleotide exchange factor (GEF) 5b
Gene rassf6 Ras association domain family member 6
Gene rbsn rabenosyn, RAB effector
Gene rictorb RPTOR independent companion of MTOR, complex 2b
Gene rims1b regulating synaptic membrane exocytosis 1b
Gene rpgrip1 RPGR interacting protein 1
Gene rph3al rabphilin 3A-like (without C2 domains)
Gene rreb1b ras responsive element binding protein 1b
Gene rubcn rubicon autophagy regulator
Gene scap SREBF chaperone
Gene scarb1 scavenger receptor class B, member 1
Gene scml2 Scm polycomb group protein like 2
Gene scxb scleraxis bHLH transcription factor b
Gene sdr42e1 short chain dehydrogenase/reductase family 42E, member 1
Gene selenok selenoprotein K
Gene selp selectin P
Gene sesn1 sestrin 1
Gene si:ch73-25f10.6 si:ch73-25f10.6
Gene si:ch73-286h23.3 si:ch73-286h23.3
Gene si:ch73-286h23.4 si:ch73-286h23.4
Gene si:ch211-84m6.5 si:ch211-84m6.5
lincRNA Gene si:ch211-139k8.2 si:ch211-139k8.2
Gene si:ch211-273l18.4 si:ch211-273l18.4
Gene si:ch211-281k19.2 si:ch211-281k19.2
Gene si:dkey-52p2.5 si:dkey-52p2.5
Gene si:dkey-228l14.1 si:dkey-228l14.1
Gene si:dkey-266m15.7 si:dkey-266m15.7
Gene si:dkeyp-9d4.3 si:dkeyp-9d4.3
Gene six9 SIX homeobox 9
Gene slc2a1b solute carrier family 2 member 1b
Gene slc7a8b solute carrier family 7 member 8b
Gene slc7a10b solute carrier family 7 member 10b
Gene slc12a7b solute carrier family 12 member 7b
Gene slc22a5 solute carrier family 22 member 5
Gene slc25a13 solute carrier family 25 member 13
Gene smim8 small integral membrane protein 8
Gene smtlb somatolactin beta
Gene soga1 suppressor of glucose, autophagy associated 1
Gene soga3a SOGA family member 3a
Gene sorbs1 sorbin and SH3 domain containing 1
Gene sorbs2b sorbin and SH3 domain containing 2b
Gene sox18 SRY-box transcription factor 18
Gene sspn sarcospan (Kras oncogene-associated gene)
Gene sst7 somatostatin family member 7
Gene stk36 serine/threonine kinase 36 (fused homolog, Drosophila)
Gene swt1 SWT1 RNA endoribonuclease homolog
Gene taar12f trace amine associated receptor 12f
Gene taar13c trace amine associated receptor 13c
Gene tbc1d4 TBC1 domain family, member 4
Gene tcf7l1b transcription factor 7 like 1b
Gene tdrd15 tudor domain containing 15
Gene telo2 TEL2, telomere maintenance 2, homolog (S. cerevisiae)
Gene tjp1b tight junction protein 1b
Gene tnfaip3 tumor necrosis factor, alpha-induced protein 3
Gene tns2b tensin 2b
Gene toporsa topoisomerase I binding, arginine/serine-rich a
Gene tpmt.1 thiopurine S-methyltransferase, tandem duplicate 1
Gene tpmt.2 thiopurine S-methyltransferase, tandem duplicate 2
Gene trpm2 transient receptor potential cation channel, subfamily M, member 2
Gene tshz3a teashirt zinc finger homeobox 3a
Gene tspan1 tetraspanin 1
Gene tssk6 testis-specific serine kinase 6
Gene ttc39a tetratricopeptide repeat domain 39A
Gene tubb2b tubulin, beta 2b
Gene tulp1a TUB like protein 1a
Gene ucn3l urocortin 3, like
Gene ugt2a4 UDP glucuronosyltransferase 2 family, polypeptide A4
Gene ugt8 UDP glycosyltransferase 8
Gene uvssa UV-stimulated scaffold protein A
Pseudogene vrk1p VRK serine/threonine kinase 1, pseudogene
Gene waplb WAPL cohesin release factor b
Gene xkr5b XK related 5b
Gene xpa xeroderma pigmentosum, complementation group A
Gene zfp36l1a zinc finger protein 36, C3H type-like 1a
Gene zgc:112255 zgc:112255
Gene zgc:112964 zgc:112964
Gene zgc:152670 zgc:152670
Gene zgc:171445 zgc:171445
Gene zgc:171781 zgc:171781
Gene znf512 zinc finger protein 512
Gene znf990 zinc finger protein 990