ZFIN Publication ID PubMed ID Authors Title Journal Year Volume Pages
ZDB-PUB-001101-4 11044603 Shinya, M., Eschbach, C., Clark, M., Lehrach, H., and Furutani-Seiki, M. Zebrafish Dkk1, induced by the pre-MBT Wnt signaling, is secreted from the prechordal plate and patterns the anterior neural plate Mechanisms of Development 2000 98(1-2) 3-17
ZDB-PUB-030408-4 12676325 Momoi, A., Yoda, H., Steinbeisser, H., Fagotto, F., Kondoh, H., Kudo, A., Driever, W., and Furutani-Seiki, M. Analysis of Wnt8 for neural posteriorizing factor by identifying Frizzled 8c and Frizzled 9 as functional receptors for Wnt8 Mechanisms of Development 2003 120(4) 477-489
ZDB-PUB-030728-12 12879074 Agathon, A., Thisse, C., and Thisse, B. The molecular nature of the zebrafish tail organizer Nature 2003 424(6947) 448-452
ZDB-PUB-040217-2 12477932 Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences Proceedings of the National Academy of Sciences of the United States of America 2002 99(26) 16899-903
ZDB-PUB-041115-4 15539488 Kapsimali, M., Caneparo, L., Houart, C., and Wilson, S.W. Inhibition of Wnt/Axin/{beta}-catenin pathway activity promotes ventral CNS midline tissue to adopt hypothalamic rather than floorplate identity Development (Cambridge, England) 2004 131(23) 5923-5933
ZDB-PUB-051221-5 16364286 Seiliez, I., Thisse, B., and Thisse, C. FoxA3 and goosecoid promote anterior neural fate through inhibition of Wnt8a activity before the onset of gastrulation Developmental Biology 2006 290(1) 152-163
ZDB-PUB-060313-6 16504595 Tendeng, C., and Houart, C. Cloning and embryonic expression of five distinct sfrp genes in the zebrafish Danio rerio Gene expression patterns : GEP 2006 6(8) 761-771
ZDB-PUB-060724-25 16854974 Peng, G., and Westerfield, M. Lhx5 promotes forebrain development and activates transcription of secreted Wnt antagonists Development (Cambridge, England) 2006 133(16) 3191-3200
ZDB-PUB-070523-31 16466575 Steinke, D., Salzburger, W., Braasch, I., and Meyer, A. Many genes in fish have species-specific asymmetric rates of molecular evolution BMC Genomics 2006 7(1) 20
ZDB-PUB-091101-14 19855023 Fauny, J.D., Thisse, B., and Thisse, C. The entire zebrafish blastula-gastrula margin acts as an organizer dependent on the ratio of Nodal to BMP activity Development (Cambridge, England) 2009 136(22) 3811-3819
ZDB-PUB-100511-22 20452340 Mo, S., Wang, L., Li, Q., Li, J., Li, Y., Thannickal, V.J., and Cui. Z. Caveolin-1 regulates dorsoventral patterning through direct interaction with beta-catenin in zebrafish Developmental Biology 2010 344(1) 210-223
ZDB-PUB-110920-17 21911385 Lu, F.I., Thisse, C., and Thisse, B. Identification and mechanism of regulation of the zebrafish dorsal determinant Proceedings of the National Academy of Sciences of the United States of America 2011 108(38) 15876-80
ZDB-PUB-120202-6 22286130 Shestopalov, I.A., Pitt, C.L., and Chen, J.K. Spatiotemporal resolution of the Ntla transcriptome in axial mesoderm development Nature Chemical Biology 2012 8(3) 270-276
ZDB-PUB-130211-12 23364330 Liu, J.X., Zhang, D., Xie, X., Ouyang, G., Liu, X., Sun, Y., and Xiao, W. Eaf1 and Eaf2 negatively regulate canonical Wnt/β-catenin signaling Development (Cambridge, England) 2013 140(5) 1067-1078
ZDB-PUB-130610-81 23671706 Riera, M., Burguera, D., Garcia-Fernàndez, J., and Gonzàlez-Duarte, R. CERKL Knockdown Causes Retinal Degeneration in Zebrafish PLoS One 2013 8(5) e64048
ZDB-PUB-130710-93 23806211 Kamel, G., Hoyos, T., Rochard, L., Dougherty, M., Tse, W., Shubinets, V., Grimaldi, M., and Liao, E.C. Requirement for frzb and fzd7a in cranial neural crest convergence and extension mechanisms during zebrafish palate and jaw morphogenesis Developmental Biology 2013 381(2) 423-33
ZDB-PUB-140513-206 24700857 Xu, P.F., Houssin, N., Ferri-Lagneau, K.F., Thisse, B., Thisse, C. Construction of a vertebrate embryo from two opposing morphogen gradients Science (New York, N.Y.) 2014 344 87-9
ZDB-PUB-141031-3 25357034 Gfrerer, L., Shubinets, V., Hoyos, T., Kong, Y., Nguyen, C., Pietschmann, P., Morton, C.C., Maas, R.L., Liao, E.C. Functional Analysis of SPECC1L in Craniofacial Development and Oblique Facial Cleft Pathogenesis Plastic and reconstructive surgery 2014 134 748-759
ZDB-PUB-150122-7 25605329 Yang, X., Gu, Q., Lin, L., Li, S., Zhong, S., Li, Q., Cui, Z. Nucleoporin 62-like protein activates canonical Wnt signaling through facilitating the nuclear import of β-catenin in zebrafish Molecular and cellular biology 2015 35(7) 1110-24
ZDB-PUB-150219-1 25692557 Takamiya, M., Weger, B.D., Schindler, S., Beil, T., Yang, L., Armant, O., Ferg, M., Schlunck, G., Reinhard, T., Dickmeis, T., Rastegar, S., Strähle, U. Molecular Description of Eye Defects in the Zebrafish Pax6b Mutant, sunrise, Reveals a Pax6b-Dependent Genetic Network in the Developing Anterior Chamber PLoS One 2015 10 e0117645
ZDB-PUB-150414-1 25867923 Satija, R., Farrell, J.A., Gennert, D., Schier, A.F., Regev, A. Spatial reconstruction of single-cell gene expression data Nat. Biotechnol. 2015 33(5) 495-502
ZDB-PUB-151112-9 Jackson, H.W., Prakash, D., Litaker, M., Ferreira, T., Jezewski, P.A. Zebrafish Wnt9b Patterns the First Pharyngeal Arch into D-I-V Domains and Promotes Anterior-Medial Outgrowth American Journal of Molecular Biology 2015 5(3) 57-83
ZDB-PUB-160722-12 27287801 Rochard, L., Monica, S.D., Ling, I.T., Kong, Y., Roberson, S., Harland, R., Halpern, M., Liao, E.C. Roles of Wnt pathway genes wls, wnt9a, wnt5b, frzb and gpc4 in regulating convergent-extension during zebrafish palate morphogenesis Development (Cambridge, England) 2016 143 2541-7
ZDB-PUB-170119-11 28096348 Rabinowitz, J.S., Robitaille, A.M., Wang, Y., Ray, C.A., Thummel, R., Gu, H., Djukovic, D., Raftery, D., Berndt, J.D., Moon, R.T. Transcriptomic, proteomic, and metabolomic landscape of positional memory in the caudal fin of zebrafish Proceedings of the National Academy of Sciences of the United States of America 2017 114(5) E717-E726
ZDB-PUB-170214-96 26469318 Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. RFX transcription factors are essential for hearing in mice Nature communications 2015 6 8549
ZDB-PUB-180308-3 29511374 Du, Z., Ma, H.L., Zhang, Z.Y., Zheng, J.W., Wang, Y.A. Transgenic Expression of A Venous Malformation Related Mutation, TIE2-R849W, Significantly Induces Multiple Malformations of Zebrafish. International journal of medical sciences 2018 15 385-394
ZDB-PUB-180428-1 29700225 Farrell, J.A., Wang, Y., Riesenfeld, S.J., Shekhar, K., Regev, A., Schier, A.F. Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis Science (New York, N.Y.) 2018 360(6392)
ZDB-PUB-180629-6 29952749 Collins, M.M., Maischein, H.M., Dufourcq, P., Charpentier, M., Blader, P., Stainier, D.Y. Pitx2c orchestrates embryonic axis extension via mesendodermal cell migration eLIFE 2018 7
ZDB-PUB-200724-27 32702011 He, M., Zhang, R., Jiao, S., Zhang, F., Ye, D., Wang, H., Sun, Y. Nanog safeguards early embryogenesis against global activation of maternal β-catenin activity by interfering with TCF factors PLoS Biology 2020 18 e3000561
ZDB-PUB-200802-4 32737134 Gao, X., Huang, S.S., Qiu, S.W., Su, Y., Wang, W.Q., Xu, H.Y., Xu, J.C., Kang, D.Y., Dai, P., Yuan, Y.Y. Congenital sensorineural hearing loss as the initial presentation of PTPN11-associated Noonan syndrome with multiple lentigines or Noonan syndrome: clinical features and underlying mechanisms Journal of Medical Genetics 2020 58(7) 465-474
ZDB-PUB-201126-5 33234718 Carroll, S.H., Macias Trevino, C., Li, E.B., Kawasaki, K., Myers, N., Hallett, S.A., Alhazmi, N., Cotney, J., Carstens, R.P., Liao, E.C. An Irf6-Esrp1/2 regulatory axis controls midface morphogenesis in vertebrates Development (Cambridge, England) 2020 147(24)
ZDB-PUB-201128-5 33245093 Oh, C.K., Ko, Y., Park, J.J., Heo, H.J., Kang, J., Kwon, E.J., Kang, J.W., Lee, Y., Myung, K., Kang, J.M., Ko, D.S., Kim, Y.H. FRZB as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity Bioscience Reports 2020 41(1)
ZDB-PUB-211022-40 34666023 Klingbeil, K., Nguyen, T., Fahrner, A., Guthmann, C., Wang, H., Schoels, M., Lilienkamp, M., Franz, H., Eckert, P., Walz, G., Yakulov, T.A. Corpuscles of Stannius development requires FGF signaling Developmental Biology 2021 481 160-171
ZDB-PUB-220303-2 34936444 Wu, X., Zhang, H., Zhang, B., Zhang, Y., Wang, Q., Shen, W., Wu, X., Li, L., Xia, W., Nakamura, R., Liu, B., Liu, F., Takeda, H., Meng, A., Xie, W. Methylome inheritance and enhancer dememorization reset an epigenetic gate safeguarding embryonic programs Science advances 2021 7 eabl3858
ZDB-PUB-220603-5 35652354 Sun, J., Peterson, E.A., Wang, A.Z., Ou, J., Smith, K.E., Poss, K.D., Wang, J. hapln1 Defines an Epicardial Cell Subpopulation Required for Cardiomyocyte Expansion During Heart Morphogenesis and Regeneration Circulation 2022 146(1) 48-63
ZDB-PUB-220824-1 35986567 Chen, X., Liu, F., Chen, K., Wang, Y., Yin, A., Kang, X., Yang, S., Zhao, H., Dong, S., Li, Y., Chen, J., Wu, Y. TFG mutation induces haploinsufficiency and drives axonal Charcot-Marie-Tooth disease by causing neurite degeneration CNS neuroscience & therapeutics 2022 28(12) 2076-2089
ZDB-PUB-221211-1 36495292 Shin, K., Begeman, I.J., Cao, J., Kang, J. leptin b and its regeneration enhancer illustrate the regenerative features of zebrafish hearts Developmental Dynamics : an official publication of the American Association of Anatomists 2022 253(1) 91-106
ZDB-PUB-230407-53 37024546 Vöcking, O., Famulski, J.K. A temporal single cell transcriptome atlas of zebrafish anterior segment development Scientific Reports 2023 13 56565656