ZFIN Publication ID	PubMed ID	Authors	Title	Journal	Year	Volume	Pages
ZDB-PUB-040217-2	12477932	Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences	Proceedings of the National Academy of Sciences of the United States of America	2002	99(26)	16899-903
ZDB-PUB-050823-6	16109975	Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S.	The zebrafish gene map defines ancestral vertebrate chromosomes	Genome research	2005	15(9)	1307-1314
ZDB-PUB-080908-5	18765295	Cambier, S., Bénard, G., Mesmer-Dudons, N., Gonzalez, P., Rossignol, R., Brèthes, D., and Bourdineaud, J.P.	At environmental doses, dietary methylmercury inhibits mitochondrial energy metabolism in skeletal muscles of the zebra fish (Danio rerio)	The international journal of biochemistry & cell biology	2009	41(4)	791-799
ZDB-PUB-090330-6	19308258	Gomez, G.A., Veldman, M.B., Zhao, Y., Burgess, S., and Lin, S.	Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish	PLoS One	2009	4(3)	e4994
ZDB-PUB-090629-12	19540320	Wang, Z., Nishimura, Y., Shimada, Y., Umemoto, N., Hirano, M., Zang, L., Oka, T., Sakamoto, C., Kuroyanagi, J., and Tanaka, T.	Zebrafish beta-adrenergic receptor mRNA expression and control of pigmentation	Gene	2009	446(1)	18-27
ZDB-PUB-100614-21	20528263	Singh, S.K., Sundaram, C.S., Shanbhag, S., and Idris, M.M.	Proteomic profile of zebrafish brain based on two-dimensional gel electrophoresis matrix-assisted laser desorption/ionization MS/MS analysis	Zebrafish	2010	7(2)	169-177
ZDB-PUB-100820-4	20701985	Lerebours, A., Adam-Guillermin, C., Brèthes, D., Frelon, S., Floriani, M., Camilleri, V., Garnier-Laplace, J., and Bourdineaud, J.P.	Mitochondrial energetic metabolism perturbations in skeletal muscles and brain of zebrafish (Danio rerio) exposed to low concentrations of waterborne uranium	Aquatic toxicology (Amsterdam, Netherlands)	2010	100(1)	66-74
ZDB-PUB-111011-22	21947502	Cambier, S., Gonzalez, P., Mesmer-Dudons, N., Brèthes, D., Fujimura, M., and Bourdineaud, J.P.	Effects of dietary methylmercury on the zebrafish brain: histological, mitochondrial, and gene transcription analyses	Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine	2012	25(1)	165-180
ZDB-PUB-120404-18	22465854	Artuso, L., Romano, A., Verri, T., Domenichini, A., Argenton, F., Santorelli, F.M., and Petruzzella, V.	Mitochondrial DNA metabolism in early development of zebrafish (Danio rerio)	Biochim. Biophys. Acta Bio-Energetics	2012	1817(7)	1002-1011
ZDB-PUB-120709-3	22767353	Ling, X.P., Lu, Y.H., and Huang, H.Q.	Differential protein profile in zebrafish (Danio rerio) brain under the joint exposure of methyl parathion and cadmium	Environmental science and pollution research international	2012	19(9)	3925-3941
ZDB-PUB-121121-9	23117182	Chen, K., Cole, R.B., and Rees, B.B.	Hypoxia-induced changes in the zebrafish (Danio rerio) skeletal muscle proteome	Journal of proteomics	2013	78	477-485
ZDB-PUB-130410-12	23531055	Little, A.G., Kunisue, T., Kannan, K., and Seebacher, F.	Thyroid hormone actions are temperature-specific and regulate thermal acclimation in Zebrafish (Danio rerio)	BMC Biology	2013	11(1)	26
ZDB-PUB-131115-8	24123299	Gebriel, M., Prabhudesai, S., Uleberg, K.E., Larssen, E., Piston, D., Bjørnstad, A.H., Møller, S.G.	Zebrafish brain proteomics reveals central proteins involved in neurodegeneration	Journal of neuroscience research	2014	92(1)	104-15
ZDB-PUB-140404-1	24476500	Motorykin, I., Traber, M.G., Tanguay, R.L., and Maier, C.S.	Proteome-Driven Elucidation of Adaptive Responses to Combined Vitamin E and C Deficiency in Zebrafish	Journal of Proteome Research	2014	13(3)	1647-56
ZDB-PUB-140513-388	24611545	Nolte, H., Konzer, A., Ruhs, A., Jungblut, B., Braun, T., Krüger, M.	Global protein expression profiling of zebrafish organs based on in vivo incorporation of stable isotopes	Journal of Proteome Research	2014	13	2162-74
ZDB-PUB-141217-1	25514059	Little, A.G., Seebacher, F.	Temperature determines toxicity: Bisphenol A reduces thermal tolerance in fish	Environmental pollution (Barking, Essex : 1987)	2015	197C	84-89
ZDB-PUB-150711-10	26156497	Missinato, M.A., Tobita, K., Romano, N., Carroll, J.A., Tsang, M.	Extracellular component hyaluronic acid and its receptor Hmmr are required for epicardial EMT during heart regeneration	Cardiovascular research	2015	107(4)	487-98
ZDB-PUB-161208-2	27924917	Yang, Y., Liu, W., Mu, X., Qi, S., Fu, B., Wang, C.	Biological response of zebrafish embryos after short-term exposure to thifluzamide	Scientific Reports	2016	6	38485
ZDB-PUB-170201-8	28138518	Chen, W.C., Wang, Z., Missinato, M.A., Park, D.W., Long, D.W., Liu, H.J., Zeng, X., Yates, N.A., Kim, K., Wang, Y.	Decellularized zebrafish cardiac extracellular matrix induces mammalian heart regeneration	Science advances	2016	2	e1600844
ZDB-PUB-170214-96	26469318	Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R.	RFX transcription factors are essential for hearing in mice	Nature communications	2015	6	8549
ZDB-PUB-170303-4	28252024	Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G.	Evolution of complexity in the zebrafish synapse proteome	Nature communications	2017	8	14613
ZDB-PUB-170524-1	28535465	Yang, Y., Liu, W., Li, D., Qian, L., Fu, B., Wang, C.	Altered glycometabolism in zebrafish exposed to thifluzamide	Chemosphere	2017	183	89-96
ZDB-PUB-171011-9	28993024	Parolini, M., Bini, L., Magni, S., Rizzo, A., Ghilardi, A., Landi, C., Armini, A., Del Giacco, L., Binelli, A.	Exposure to cocaine and its main metabolites altered the protein profile of zebrafish embryos	Environmental pollution (Barking, Essex : 1987)	2018	232	603-614
ZDB-PUB-171212-3	29225006	Robinson, B.L., Dumas, M., Ali, S.F., Paule, M.G., Gu, Q., Kanungo, J.	Mechanistic studies on ketamine-induced mitochondrial toxicity in zebrafish embryos	Neurotoxicology and teratology	2018	69	63-72
ZDB-PUB-171214-2	29234032	Nagata, Y., Yamagishi, M., Konno, T., Nakanishi, C., Asano, Y., Ito, S., Nakajima, Y., Seguchi, O., Fujino, N., Kawashiri, M.A., Takashima, S., Kitakaze, M., Hayashi, K.	Heat Failure Phenotypes Induced by Knockdown of DAPIT in Zebrafish: A New Insight into Mechanism of Dilated Cardiomyopathy	Scientific Reports	2017	7	17417
ZDB-PUB-180808-9	30082823	Piragyte, I., Clapes, T., Polyzou, A., Klein Geltink, R.I., Lefkopoulos, S., Yin, N., Cauchy, P., Curtis, J.D., Klaeylé, L., Langa, X., Beckmann, C.C.A., Wlodarski, M.W., Müller, P., Van Essen, D., Rambold, A., Kapp, F.G., Mione, M., Buescher, J.M., Pearce, E.L., Polyzos, A., Trompouki, E.	A metabolic interplay coordinated by HLX regulates myeloid differentiation and AML through partly overlapping pathways	Nature communications	2018	9	3090
ZDB-PUB-181115-14	30428046	Munro, B., Horvath, R., Müller, J.S.	Nucleoside supplementation modulates mitochondrial DNA copy number in the dguok-/- zebrafish	Human molecular genetics	2018	28(5)	796-803
ZDB-PUB-190914-7	31518507	Ni, S., Zhou, Y., Chen, Y., Du, X., Zhang, S.	Identification of ATP synthase α subunit as a new maternal factor capable of protecting zebrafish embryos from bacterial infection	FASEB journal : official publication of the Federation of American Societies for Experimental Biology	2019	33(11)	12983-13001
ZDB-PUB-200817-8	32795888	Tao, Y., Yang, Y., Jiao, Y., Wu, S., Zhu, G., Akindolie, M.S., Zhu, T., Qu, J., Wang, L., Zhang, Y.	Monobutyl phthalate (MBP) induces energy metabolism disturbances in the gills of adult zebrafish (Danio rerio)	Environmental pollution (Barking, Essex : 1987)	2020	266	115288
ZDB-PUB-200819-6	32806454	Yang, Y., Dong, F., Liu, X., Xu, J., Wu, X., Zheng, Y.	Thifluzamide induces the toxic effects on zebrafish (Danio rerio) via inhibition of succinate dehydrogenase (SDH)	Environmental pollution (Barking, Essex : 1987)	2020	265	115031
ZDB-PUB-201002-96	32947675	Zhuang, J., Pan, Z.J., Mengqiu-Li, ., Hong, F.S., Zhu, C.K., Wu, N., Chang, G., Wang, H., Zhao, X.X.	BDE-47 induced apoptosis in zebrafish embryos through mitochondrial ROS-mediated JNK signaling	Chemosphere	2020	258	127385
ZDB-PUB-210207-23	33548715	Lee, J.Y., Park, H., Lim, W., Song, G.	Aclonifen causes developmental abnormalities in zebrafish embryos through mitochondrial dysfunction and oxidative stress	The Science of the total environment	2021	771	145445
ZDB-PUB-210302-9	33644064	Sengupta, A., Padhan, D.K., Ganguly, A., Sen, M.	Ccn6 Is Required for Mitochondrial Integrity and Skeletal Muscle Function in Zebrafish	Frontiers in cell and developmental biology	2021	9	627409
ZDB-PUB-210622-19	34141984	Park, K.H., Gooz, M., Ye, Z.W., Zhang, J., Beeson, G.C., Rockey, D.C., Kim, S.H.	Flavin Adenine Dinucleotide Depletion Caused by <i>electron transfer flavoprotein subunit alpha</i> Haploinsufficiency Leads to Hepatic Steatosis and Injury in Zebrafish	Hepatology communications	2021	5	976-991
ZDB-PUB-220126-29	35065906	Jamieson-Lucy, A.H., Kobayashi, M., James Aykit, Y., Elkouby, Y., Escobar-Aguirre, M., Vejnar, C., Giraldez, A., Mullins, M.C.	A proteomics approach identifies novel resident zebrafish Balbiani body proteins Cirbpa and Cirbpb	Developmental Biology	2022	484	1-11
ZDB-PUB-221026-14	36283702	Uszczynska-Ratajczak, B., Sugunan, S., Kwiatkowska, M., Migdal, M., Carbonell-Sala, S., Sokol, A., Winata, C.L., Chacinska, A.	Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish	Life science alliance	2022	6(1)	
ZDB-PUB-230226-67	36835354	Le Mentec, H., Monniez, E., Legrand, A., Monvoisin, C., Lagadic-Gossmann, D., Podechard, N.	A New In Vivo Zebrafish Bioassay Evaluating Liver Steatosis Identifies DDE as a Steatogenic Endocrine Disruptor, Partly through SCD1 Regulation	International Journal of Molecular Sciences	2023	24(4)	
ZDB-PUB-250109-137	39747914	She, P., Gao, B., Li, D., Wu, C., Zhu, X., He, Y., Mo, F., Qi, Y., Jin, D., Chen, Y., Zhao, X., Lin, J., Hu, H., Li, J., Zhang, B., Xie, P., Lin, C., Christoffels, V.M., Wu, Y., Zhu, P., Zhong, T.P.	The transcriptional repressor HEY2 regulates mitochondrial oxidative respiration to maintain cardiac homeostasis	Nature communications	2025	16	232232