ZFIN Publication ID	PubMed ID	Authors	Title	Journal	Year	Volume	Pages
ZDB-PUB-040217-2	12477932	Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences	Proceedings of the National Academy of Sciences of the United States of America	2002	99(26)	16899-903
ZDB-PUB-070726-29	17640903	Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M.	Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions	Proceedings of the National Academy of Sciences of the United States of America	2007	104(30)	12428-12433
ZDB-PUB-080506-10	18455246	Li, G., Xie, P., Fu, J., Hao, L., Xiong, Q., and Li, H.	Microcystin-induced variations in transcription of GSTs in an omnivorous freshwater fish, goldfish	Aquatic toxicology (Amsterdam, Netherlands)	2008	88(1)	75-80
ZDB-PUB-100427-26	20419347	da Rosa, C.E., Figueiredo, M.A., Lanes, C.F., Almeida, D.V., and Marins, L.F.	Genotype-dependent gene expression profile of the antioxidant defense system (ADS) in the liver of a GH-transgenic zebrafish model	Transgenic Research	2011	20(1)	85-89
ZDB-PUB-101222-29	21158564	Liu, W., Guan, Y., and Collodi, P.	A Zebrafish Cell Culture Assay for the Identification of MicroRNA Targets	Zebrafish	2010	7(4)	343-348
ZDB-PUB-110429-16	21445457	Li, Z.H., Alex, D., Siu, S.O., Chu, I.K., Renn, J., Winkler, C., Lou, S., Tsui, S.K., Zhao, H.Y., Yan, W.R., Mahady, G.B., Li, G.H., Kwan, Y.W., Wang, Y.T., and Lee, S.M.	Combined in vivo imaging and omics approaches reveal metabolism of icaritin and its glycosides in zebrafish larvae	Molecular Biosystems	2011	7(7)	2128-38
ZDB-PUB-110613-4	21641295	Chen, D.S., and Chan, K.M.	Differentially expressed proteins in zebrafish liver cells exposed to copper	Aquatic toxicology (Amsterdam, Netherlands)	2011	104(3-4)	270-277
ZDB-PUB-130221-6	23382537	Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S.	A large-scale zebrafish gene knockout resource for the genome-wide study of gene function	Genome research	2013	23(4)	727-735
ZDB-PUB-130418-8	23570992	Carlson, P., Smalley, D.M., and Van Beneden, R.J.	Proteomic analysis of arsenic-exposed zebrafish (Danio rerio) identifies altered expression in proteins involved in fibrosis and lipid uptake in a gender-specific manner	Toxicological sciences : an official journal of the Society of Toxicology	2013	134(1)	83-91
ZDB-PUB-130710-6	23770340	Timme-Laragy, A.R., Goldstone, J.V., Imhoff, B.R., Stegeman, J.J., Hahn, M.E., and Hansen, J.M.	Glutathione redox dynamics and expression of glutathione-related genes in the developing embryo	Free radical biology & medicine	2013	65	89-101
ZDB-PUB-140513-193	24705702	Mukhopadhyay, D., Chattopadhyay, A.	Induction of Oxidative Stress and Related Transcriptional Effects of Sodium Fluoride in Female Zebrafish Liver	Bulletin of environmental contamination and toxicology	2014	93(1)	64-70
ZDB-PUB-140815-3	25119852	Rola, R.C., Marins, L.F., Nery, L.E., da Rosa, C.E., Sandrini, J.Z.	Responses to ROS inducer agents in zebrafish cell line: differences between copper and UV-B radiation	Fish physiology and biochemistry	2014	40(6)	1817-25
ZDB-PUB-140905-1	25188630	Brun, N.R., Christen, V., Furrer, G., Fent, K.	Indium and Indium Tin Oxide Induce Endoplasmic Reticulum Stress and Oxidative Stress in Zebrafish (Danio rerio)	Environmental science & technology	2014	48(19)	11679-87
ZDB-PUB-141203-21	25461745	Glisic, B., Mihaljevic, I., Popovic, M., Zaja, R., Loncar, J., Fent, K., Kovacevic, R., Smital, T.	Characterization of glutathione-S-transferases in zebrafish (Danio rerio)	Aquatic toxicology (Amsterdam, Netherlands)	2015	158C	50-62
ZDB-PUB-141203-68	25445019	Liu, L., Xu, Y., Xu, L., Wang, J., Wu, W., Xu, L., Yan, Y.	Analysis of differentially expressed proteins in zebrafish (Danio rerio) embryos exposed to chlorpyrifos	Comparative biochemistry and physiology. Toxicology & pharmacology : CBP	2015	167C	183-189
ZDB-PUB-150207-1	25657010	Makino, S., Mishima, Y., Inoue, K., Inada, T.	Roles of mRNA-fate modulators Dhh1 and Pat1 in TNRC6-dependent gene silencing recapitulated in yeast	The Journal of biological chemistry	2015	290(13)	8331-47
ZDB-PUB-150808-14	26245810	Mukhopadhyay, D., Priya, P., Chattopadhyay, A.	Sodium fluoride affects zebrafish behaviour and alters mRNA expressions of biomarker genes in the brain: Role of Nrf2/Keap1	Environmental Toxicology and Pharmacology	2015	40	352-359
ZDB-PUB-151024-7	26494252	Hrubik, J., Glisic, B., Fa, S., Pogrmic-Majkic, K., Andric, N.	Erk-Creb pathway suppresses glutathione-S-transferase pi expression under basal and oxidative stress conditions in zebrafish embryos	Toxicology letters	2016	240(1)	81-92
ZDB-PUB-151121-14	26584595	Xia, L., Zheng, L., Zhou, J.L.	Transcriptional and morphological effects of tamoxifen on the early development of zebrafish (Danio rerio)	Journal of applied toxicology : JAT	2016	36(6)	853-62
ZDB-PUB-151130-1	26615488	Brun, N.R., Wehrli, B., Fent, K.	Ecotoxicological assessment of solar cell leachates: Copper indium gallium selenide (CIGS) cells show higher activity than organic photovoltaic (OPV) cells	The Science of the total environment	2016	543	703-714
ZDB-PUB-160113-14	26748408	Faltermann, S., Grundler, V., Gademann, K., Pernthaler, J., Fent, K.	Comparative effects of nodularin and microcystin-LR in zebrafish: 2. Uptake and molecular effects in eleuthero-embryos and adult liver with focus on endoplasmic reticulum stress	Aquatic toxicology (Amsterdam, Netherlands)	2016	171	77-87
ZDB-PUB-160319-6	26990990	Mishima, Y., Tomari, Y.	Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish	Molecular Cell	2016	61	874-885
ZDB-PUB-160529-4	27235108	Du, Z., Chen, X., Li, X., He, K., Ji, S., Shi, W., Hao, A.	Protein palmitoylation activate zygotic gene expression during the maternal-to-zygotic transition	Biochemical and Biophysical Research Communications	2016	475(2)	194-201
ZDB-PUB-160720-1	27428998	Faltermann, S., Hutter, S., Christen, V., Hettich, T., Fent, K.	Anti-Inflammatory Activity of Cyanobacterial Serine Protease Inhibitors Aeruginosin 828A and Cyanopeptolin 1020 in Human Hepatoma Cell Line Huh7 and Effects in Zebrafish (Danio rerio)	toxins	2016	8(7)	
ZDB-PUB-161222-2	28002765	Li, K., Wu, J.Q., Jiang, L.L., Shen, L.Z., Li, J.Y., He, Z.H., Wei, P., Lv, Z., He, M.F.	Developmental toxicity of 2,4-dichlorophenoxyacetic acid in zebrafish embryos	Chemosphere	2017	171	40-48
ZDB-PUB-170214-96	26469318	Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R.	RFX transcription factors are essential for hearing in mice	Nature communications	2015	6	8549
ZDB-PUB-170223-3	28224202	Liu, Y., Zhu, Z., Ho, I.H., Shi, Y., Xie, Y., Li, J., Zhang, Y., Chan, M.T., Cheng, C.H.	Germline-specific dgcr8 knockout in zebrafish using a BACK approach	Cellular and molecular life sciences : CMLS	2017	74(13)	2503–2511
ZDB-PUB-170227-4	28236482	Christen, V., Faltermann, S., Brun, N.R., Kunz, P.Y., Fent, K.	Cytotoxicity and molecular effects of biocidal disinfectants (quaternary ammonia, glutaraldehyde, poly(hexamethylene biguanide) hydrochloride PHMB) and their mixtures in vitro and in zebrafish eleuthero-embryos	The Science of the total environment	2017	586	1204-1218
ZDB-PUB-170303-4	28252024	Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G.	Evolution of complexity in the zebrafish synapse proteome	Nature communications	2017	8	14613
ZDB-PUB-170407-6	28381614	Despic, V., Dejung, M., Gu, M., Krishnan, J., Zhang, J., Herzel, L., Straube, K., Gerstein, M.B., Butter, F., Neugebauer, K.M.	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	Genome research	2017	27(7)	1184-1194
ZDB-PUB-170430-9	28449966	Parolini, M., Ghilardi, A., Della Torre, C., Magni, S., Prosperi, L., Calvagno, M., Del Giacco, L., Binelli, A.	Environmental concentrations of cocaine and its main metabolites modulated antioxidant response and caused cyto-genotoxic effects in zebrafish embryo cells	Environmental pollution (Barking, Essex : 1987)	2017	226	504-514
ZDB-PUB-170618-9	28621814	Abunnaja, M.S., Kurogi, K., Mohammed, Y.I., Sakakibara, Y., Suiko, M., Hassoun, E.A., Liu, M.C.	Identification and characterization of the zebrafish glutathione S-transferase Pi-1	Journal of biochemical and molecular toxicology	2017	31(10)	
ZDB-PUB-180124-8	29361160	Tierbach, A., Groh, K.J., Schönenberger, R., Schirmer, K., Suter, M.J.	Glutathione S-transferase protein expression in different life stages of zebrafish (Danio rerio)	Toxicological sciences : an official journal of the Society of Toxicology	2018	162(2)	702-712
ZDB-PUB-180130-6	29376370	He, Y., Sun, C., Zhang, Y., Folkerts, E.J., Martin, J.W., Goss, G.G.	Developmental Toxicity of the Organic Fraction from Hydraulic Fracturing Flowback and Produced Waters to Early Life Stages of Zebrafish (Danio rerio)	Environmental science & technology	2018	52(6)	3820-3830
ZDB-PUB-181216-9	30553213	Awoyemi, O.M., Kumar, N., Schmitt, C., Subbiah, S., Crago, J.	Behavioral, molecular and physiological responses of embryo-larval zebrafish exposed to types I and II pyrethroids	Chemosphere	2018	219	526-537
ZDB-PUB-190406-11	30948728	Laue, K., Rajshekar, S., Courtney, A.J., Lewis, Z.A., Goll, M.G.	The maternal to zygotic transition regulates genome-wide heterochromatin establishment in the zebrafish embryo	Nature communications	2019	10	1551
ZDB-PUB-190530-11	31140974	Saunders, L.M., Mishra, A.K., Aman, A.J., Lewis, V.M., Toomey, M.B., Packer, J.S., Qiu, X., McFaline-Figueroa, J.L., Corbo, J.C., Trapnell, C., Parichy, D.M.	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	eLIFE	2019	8	
ZDB-PUB-191030-4	31659707	Parolini, M., Ghilardi, A., De Felice, B., Del Giacco, L.	Environmental concentration of fluoxetine disturbs larvae behavior and increases the defense response at molecular level in zebrafish (Danio rerio)	Environmental science and pollution research international	2019	26(34)	34943-34952
ZDB-PUB-200520-15	32428239	Tierbach, A., Groh, K.J., Schoenenberger, R., Schirmer, K., Suter, M.J.	Biotransformation capacity of zebrafish (Danio rerio) early life stages: Functionality of the mercapturic acid pathway	Toxicological sciences : an official journal of the Society of Toxicology	2020	176(2)	355-365
ZDB-PUB-200810-5	32758936	Hemalatha, D., Rangasamy, B., Nataraj, B., Maharajan, K., Narayanasamy, A., Ramesh, M.	Transcriptional, biochemical and histological alterations in adult zebrafish (Danio rerio) exposed to benzotriazole ultraviolet stabilizer-328	The Science of the total environment	2020	739	139851
ZDB-PUB-201218-11	33332093	Lin, W., Yan, Y., Ping, S., Li, P., Li, D., Hu, J., Liu, W., Wen, X., Ren, Y.	Metformin-Induced Epigenetic Toxicity in Zebrafish: Experimental and Molecular Dynamics Simulation Studies	Environmental science & technology	2020	55(3)	1672-1681
ZDB-PUB-210630-9	34185526	Niksirat, H., Siino, V., Steinbach, C., Levander, F.	High-Resolution Proteomic Profiling Shows Sexual Dimorphism in Zebrafish Heart-Associated Proteins	Journal of Proteome Research	2021	20(8)	4075-4088
ZDB-PUB-230407-53	37024546	Vöcking, O., Famulski, J.K.	A temporal single cell transcriptome atlas of zebrafish anterior segment development	Scientific Reports	2023	13	56565656
ZDB-PUB-241206-3	39636823	Ishibashi, K., Shichino, Y., Han, P., Wakabayashi, K., Mito, M., Inada, T., Kimura, S., Iwasaki, S., Mishima, Y.	Translation of zinc finger domains induces ribosome collision and Znf598-dependent mRNA decay in zebrafish	PLoS Biology	2024	22	e3002887e3002887