PUBLICATION

Deciphering the somite segmentation clock: beyond mutants and morphants

Authors
Lewis, J., and Ozbudak, E.M.
ID
ZDB-PUB-100809-1
Date
2007
Source
Developmental Dynamics : an official publication of the American Association of Anatomists   236(6): 1410-1415 (Review)
Registered Authors
Lewis, Julian, Ozbudak, Ertugrul
Keywords
segmentation clock, oscillation, gene expression dynamics, mathematical modeling, synchronization, Notch pathway, Hes genes, her genes
MeSH Terms
  • Animals
  • Biological Clocks/genetics
  • Biological Clocks/physiology*
  • Body Patterning/genetics
  • Body Patterning/physiology*
  • Gene Expression Regulation, Developmental*
  • Homeodomain Proteins/metabolism
  • Mutation/genetics
  • Somites/metabolism*
PubMed
17436283 Full text @ Dev. Dyn.
Abstract
The regular pattern of somite segmentation depends on a clock, the somite segmentation clock, in the form of a gene expression oscillator, operating in the presomitic mesoderm (the PSM) at the tail end of the vertebrate embryo. Genetic screens and other approaches have identified a variety of genes, including components and targets of the Notch signalling pathway, that show transcriptional oscillations in this region and appear to be necessary for correct segmentation. Mathematical modelling shows that the oscillations could plausibly be generated by a simple mechanism of delayed negative feedback, based on autoinhibition of Notch target genes of the Hes/her family by their own protein products. To move beyond plausible models to an experimentally validated theory, however, it is necessary to measure the parameters on which the proposed model is based and to devise ways of probing the dynamics of the system by means of timed disturbances so as to compare with the model's predictions. Some progress is being made in these directions.
Genes / Markers
Figures
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Antibodies
Orthology
Engineered Foreign Genes
Mapping