Gene

atad2b

ID

ZDB-GENE-110411-210

Name

ATPase family AAA domain containing 2B

Symbol

atad2b Nomenclature History

Previous Names

si:ch73-97d3.2

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Predicted to enable ATP hydrolysis activity; chromatin binding activity; and histone binding activity. Predicted to be involved in nucleosome assembly; nucleosome disassembly; and transcription initiation-coupled chromatin remodeling. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human ATAD2B (ATPase family AAA domain containing 2B).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With atad2b Human Ortholog

No data available

Associated With atad2b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR003960	ATPase, AAA-type, conserved site
Conserved_site	IPR018359	Bromodomain, conserved site
Domain	IPR001487	Bromodomain
Domain	IPR003593	AAA+ ATPase domain
Domain	IPR003959	ATPase, AAA-type, core
Domain	IPR041569	AAA ATPase, AAA+ lid domain
Family	IPR045199	ATPase family AAA domain-containing protein ATAD2-like
Homologous_superfamily	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily	IPR036427	Bromodomain-like superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	AAA ATPase, AAA+ lid domain	AAA+ ATPase domain	ATPase, AAA-type, conserved site	ATPase, AAA-type, core	ATPase family AAA domain-containing protein ATAD2-like	Bromodomain	Bromodomain, conserved site	Bromodomain-like superfamily	P-loop containing nucleoside triphosphate hydrolase
UniProtKB:A0AB13A7R6	InterPro	1402
UniProtKB:E7FE14	InterPro	1387

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	atad2b-201 (1) Ensembl	Ensembl	4,164 nt	Select Tool ZFIN BLAST
mRNA	atad2b-203 (1) Ensembl	Ensembl	2,767 nt	Select Tool ZFIN BLAST
mRNA	atad2b-204 (1) Ensembl	Ensembl	630 nt	Select Tool ZFIN BLAST
ncRNA	atad2b-003 (1) Ensembl	Ensembl	535 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations