Gene
nfic
- ID
- ZDB-GENE-080305-2
- Name
- nuclear factor I/C
- Symbol
- nfic Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 8 Mapping Details/Browsers
- Description
- Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA replication and regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in telencephalon. Orthologous to human NFIC (nuclear factor I C).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Diotel et al., 2015
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa21264 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR019739 | CTF transcription factor/nuclear factor 1, conserved site |
| Domain | IPR003619 | MAD homology 1, Dwarfin-type |
| Domain | IPR019548 | CTF transcription factor/nuclear factor 1, N-terminal |
| Domain | IPR020604 | CTF transcription factor/nuclear factor 1, DNA-binding domain |
| Family | IPR000647 | CTF transcription factor/nuclear factor 1 |
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Domain Details Per Protein
| Protein | Additional Resources | Length | CTF transcription factor/nuclear factor 1 | CTF transcription factor/nuclear factor 1, conserved site | CTF transcription factor/nuclear factor 1, DNA-binding domain | CTF transcription factor/nuclear factor 1, N-terminal | MAD homology 1, Dwarfin-type |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9Q3U5 | InterPro | 432 | |||||
| UniProtKB:A0A8M9QE35 | InterPro | 506 | |||||
| UniProtKB:A0A8M9QA09 | InterPro | 530 | |||||
| UniProtKB:A0A8M9Q2P0 | InterPro | 505 | |||||
| UniProtKB:A0A8M3B4V2 | InterPro | 521 |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-133L5 | ZFIN Curated Data | |
| Contained in | BAC | CH211-275P14 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_009303915 (1) | 13732 nt | ||
| Genomic | GenBank:CR394564 (1) | 227475 nt | ||
| Polypeptide | UniProtKB:A0A8M9QA09 (1) | 530 aa |
- Diotel, N., Viales, R.R., Armant, O., März, M., Ferg, M., Rastegar, S., Strähle, U. (2015) Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. The Journal of comparative neurology. 523(8):1202-21
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Pistocchi, A., Gaudenzi, G., Foglia, E., Monteverde, S., Moreno-Fortuny, A., Pianca, A., Cossu, G., Cotelli, F., and Messina, G. (2013) Conserved and divergent functions of Nfix in skeletal muscle development during vertebrate evolution. Development (Cambridge, England). 140(7):1528-1536
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