Gene

lyrm5b

ID

ZDB-GENE-070424-20

Name

LYR motif containing 5b

Symbol

lyrm5b Nomenclature History

Previous Names

wu:fb39e10
zgc:162127

Type

protein_coding_gene

Location

Chr: 25 Mapping Details/Browsers

Description

Predicted to be involved in respiratory electron transport chain. Predicted to be active in mitochondrion. Orthologous to human ETFRF1 (electron transfer flavoprotein regulatory factor 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

No data available

Sequence Targeting Reagents

No data available

Human Disease

Associated With lyrm5b Human Ortholog

No data available

Associated With lyrm5b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR008011	Complex 1 LYR protein domain
Domain	IPR045296	ETFRF1, LYR domain
Family	IPR052000	Electron transfer flavoprotein regulatory factor 1

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Domain Details Per Protein

Protein	Additional Resources	Length	Complex 1 LYR protein domain	Electron transfer flavoprotein regulatory factor 1	ETFRF1, LYR domain
UniProtKB:A3KNJ8	InterPro	84

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Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 25

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	lyrm5b-201 (1) Ensembl	Ensembl		1,323 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH211-59O9	CR385081	ZFIN Curated Data
Encodes	cDNA	MGC:162127	BC133879	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001159975 (1)	1334 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR385081 (1)	182806 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A3KNJ8 (1)	84 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

No data available

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

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