Gene
pudp
- ID
- ZDB-GENE-050522-36
- Name
- pseudouridine 5'-phosphatase
- Symbol
- pudp Nomenclature History
- Previous Names
-
- hdhd1
- hdhd1a
- zgc:110639
- Type
- protein_coding_gene
- Location
- Chr: 1 Mapping Details/Browsers
- Description
- Predicted to enable phosphatase activity. Is expressed in epidermis and somite. Orthologous to human PUDP (pseudouridine 5'-phosphatase).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 7 figures from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:110639 (1 image)
- IMAGE:7164577 (12 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| la013626Tg | Transgenic insertion | Unknown | Unknown | DNA | |
| sa19523 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa25611 | Allele with one point mutation | Unknown | Splice Site, Premature Stop | ENU | |
| zko617a | Allele with one insertion | Unknown | Unknown | CRISPR | |
| zko617b | Allele with one deletion | Unknown | Unknown | CRISPR |
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| Targeting Reagent | Created Alleles | Citations |
|---|---|---|
| CRISPR1-pudp | China Zebrafish Resource Center (CZRC) |
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Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR006439 | HAD hydrolase, subfamily IA |
| Family | IPR041492 | Haloacid dehalogenase-like hydrolase |
| Family | IPR045228 | Phosphatase Gpp1/Gpp2-like |
| Homologous_superfamily | IPR023198 | Phosphoglycolate phosphatase-like, domain 2 |
| Homologous_superfamily | IPR023214 | HAD superfamily |
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Domain Details Per Protein
| Protein | Additional Resources | Length | HAD hydrolase, subfamily IA | HAD-like superfamily | HAD superfamily | Haloacid dehalogenase-like hydrolase | Phosphatase Gpp1/Gpp2-like | Phosphoglycolate phosphatase-like, domain 2 |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q503F9 | InterPro | 214 | ||||||
| UniProtKB:A0A8M1N669 | InterPro | 226 |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-6O1 | ZFIN Curated Data | |
| Encodes | EST | IMAGE:7164577 | Thisse et al., 2004 | |
| Encodes | cDNA | MGC:110639 | ZFIN Curated Data | |
| Encodes | cDNA | MGC:192203 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001020615 (1) | 3398 nt | ||
| Genomic | GenBank:CR925879 (2) | 216459 nt | ||
| Polypeptide | UniProtKB:A0A8M1N669 (1) | 226 aa |
- Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
- Rissone, A., Sangiorgio, L., Monopoli, M., Beltrame, M., Zucchi, I., Bussolino, F., Arese, M., and Cotelli, F. (2010) Characterization of the neuroligin gene family expression and evolution in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(2):688-702
- Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. (2007) Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104(30):12428-12433
- Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
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