Gene
nudt13
- ID
- ZDB-GENE-040724-60
- Name
- nudix (nucleoside diphosphate linked moiety X)-type motif 13
- Symbol
- nudt13 Nomenclature History
- Previous Names
-
- si:ch211-146f4.4
- Type
- protein_coding_gene
- Location
- Chr: 12 Mapping Details/Browsers
- Description
- Predicted to enable NAD+ diphosphatase activity and NADH pyrophosphatase activity. Orthologous to human NUDT13 (nudix hydrolase 13).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Lin et al., 2020
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR020084 | NUDIX hydrolase, conserved site |
| Domain | IPR000086 | NUDIX hydrolase domain |
| Domain | IPR015375 | NADH pyrophosphatase-like, N-terminal |
| Domain | IPR049734 | NADH pyrophosphatase-like, C-terminal domain |
| Homologous_superfamily | IPR015797 | NUDIX hydrolase-like domain superfamily |
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Domain Details Per Protein
| Protein | Additional Resources | Length | NADH pyrophosphatase-like, C-terminal domain | NADH pyrophosphatase-like, N-terminal | NUDIX hydrolase, conserved site | NUDIX hydrolase domain | NUDIX hydrolase-like domain superfamily |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M3B4G0 | InterPro | 318 | |||||
| UniProtKB:A0A8M3B792 | InterPro | 360 | |||||
| UniProtKB:A0A2R8Q444 | InterPro | 280 | |||||
| UniProtKB:A0AB32U313 | InterPro | 255 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
nudt13-201
(1)
|
Ensembl | 1,480 nt | ||
| mRNA |
nudt13-202
(1)
|
Ensembl | 843 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-146F4 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001044816 (1) | 843 nt | ||
| Genomic | GenBank:AL732629 (1) | 164474 nt | ||
| Polypeptide | UniProtKB:A0A8M3B792 (1) | 360 aa |
- Lin, J., Liang, J., Wen, J., Luo, M., Li, J., Sun, X., Xu, X., Li, J., Wang, D., Wang, J., Chen, H., Lai, R., Liang, F., Li, C., Ye, F., Zhang, J., Zeng, J., Yang, S., Sheng, W. (2020) Mutations of RNF213 are responsible for sporadic cerebral cavernous malformation and lead to a mulberry-like cluster in zebrafish. Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. 41(6):1251-1263
- Cheung, C.T., Nguyen, T.V., Le Cam, A., Patinote, A., Journot, L., Reynes, C., Bobe, J. (2019) What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization. BMC Genomics. 20:584
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