Gene

lrrfip1a

ID

ZDB-GENE-030131-99

Name

leucine rich repeat (in FLII) interacting protein 1a

Symbol

lrrfip1a Nomenclature History

Previous Names

lrrfip1 (1)
hm:zeh1367
wu:fc06b04
wu:fi15c07
zeh1367

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Description

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Is expressed in adaxial cell; cardiovascular system; musculature system; retina; and somite. Orthologous to human LRRFIP1 (LRR binding FLII interacting protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7150904 (9 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lrrfip1a Human Ortholog

No data available

Associated With lrrfip1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR019139	Leucine-rich repeat flightless-interacting protein 1/2

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M2BF13	InterPro	1159
UniProtKB:A0A8M9PA47	InterPro	665
UniProtKB:A0A8M9QBC1	InterPro	1420
UniProtKB:A0A8M9QBD2	InterPro	1232
UniProtKB:A0A8M9QFZ3	InterPro	1400
UniProtKB:A0A8M9PSK0	InterPro	1358
UniProtKB:A0A8M9PSJ5	InterPro	1387
UniProtKB:A0A8M9PZR4	InterPro	1396
UniProtKB:A0A8M9PSU5	InterPro	1347
UniProtKB:A0A8M9Q531	InterPro	1334
UniProtKB:A0A8M9PA40	InterPro	1395
UniProtKB:A0A8M9Q321	InterPro	1380
UniProtKB:A0A8M9PSV0	InterPro	1168
UniProtKB:A0A8M9PZR9	InterPro	1379
UniProtKB:A0A8M9QK65	InterPro	1207
UniProtKB:A0A8M9QFZ6	InterPro	1383
UniProtKB:A0A8M9QG03	InterPro	1192
UniProtKB:A0A8M9QK54	InterPro	1410
UniProtKB:A0A8M9PLF4	InterPro	1390
UniProtKB:A0A8M3BCG7	InterPro	727
UniProtKB:A0A8M9QK63	InterPro	1363
UniProtKB:A0A8M9QBD6	InterPro	1106
UniProtKB:A0AB32TGZ2	InterPro	1208
UniProtKB:A0AB32TH27	InterPro	1293
UniProtKB:A0AB32TI87	InterPro	1170
UniProtKB:A0AB32TIL3	InterPro	1355
UniProtKB:A0AB32TL67	InterPro	1345
UniProtKB:A0AB32TVA4	InterPro	1379
UniProtKB:A0AB32TVC0	InterPro	1363
UniProtKB:A0AB32TW16	InterPro	1293
UniProtKB:A0AB32TXL7	InterPro	1334
UniProtKB:A0AB32TXM1	InterPro	1420
UniProtKB:A0AB32TXN7	InterPro	1192
UniProtKB:A0AB32TXZ4	InterPro	1232
UniProtKB:A0AB32TYJ1	InterPro	1410
UniProtKB:A0AB32TYK5	InterPro	727
UniProtKB:A0AB32TYL0	InterPro	1358
UniProtKB:A0AB32U095	InterPro	1355
UniProtKB:A0AB32U0I0	InterPro	1400
UniProtKB:A0AB32U0J3	InterPro	665
UniProtKB:A0AB32U0W4	InterPro	1383
UniProtKB:A0AB32U1U3	InterPro	1396
UniProtKB:A0AB32U1X7	InterPro	1208
UniProtKB:A0AB32U1Y1	InterPro	1380
UniProtKB:A0AB32U308	InterPro	1390

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	lrrfip1a-202 (1) Ensembl	Ensembl	1,810 nt	Select Tool ZFIN BLAST
mRNA	lrrfip1a-203 (1) Ensembl	Ensembl	1,741 nt	Select Tool ZFIN BLAST
mRNA	lrrfip1a-204 (1) Ensembl	Ensembl	1,933 nt	Select Tool ZFIN BLAST
mRNA	lrrfip1a-205 (1) Ensembl	Ensembl	4,456 nt	Select Tool ZFIN BLAST
mRNA	lrrfip1a-206 (1) Ensembl	Ensembl	3,554 nt	Select Tool ZFIN BLAST
mRNA	lrrfip1a-207 (1) Ensembl	Ensembl	607 nt	Select Tool ZFIN BLAST
mRNA	lrrfip1a-208 (1) Ensembl	Ensembl	1,004 nt	Select Tool ZFIN BLAST
mRNA	lrrfip1a-209 (1) Ensembl	Ensembl	2,167 nt	Select Tool ZFIN BLAST
mRNA	lrrfip1a-211 (1) Ensembl	Ensembl	717 nt	Select Tool ZFIN BLAST
mRNA	lrrfip1a-212 (1) Ensembl	Ensembl	824 nt	Select Tool ZFIN BLAST
ncRNA	lrrfip1a-005 (1) Ensembl	Ensembl	882 nt	Select Tool ZFIN BLAST
ncRNA	lrrfip1a-008 (1) Ensembl	Ensembl	413 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations