Gene

nitr6a

ID

ZDB-GENE-020225-42

Name

novel immune-type receptor 6a

Symbol

nitr6a Nomenclature History

Previous Names

nitr6.12 (1)
nitr6.1 (1)
nitr6.3 (1)
nitr6.4 (1)
nitr6.8 (1)
si:dz150l22.5
si:dz219h16.15
si:dz263j20.3
zgc:123065

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Predicted to be involved in response to bacterium. Predicted to act upstream of or within immune system process. Predicted to be located in plasma membrane. Orthologous to several human genes including TRAV1-1 (T cell receptor alpha variable 1-1); TRAV1-2 (T cell receptor alpha variable 1-2); and TRAV26-1 (T cell receptor alpha variable 26-1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2008

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cssl:d0262 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With nitr6a Human Ortholog

No data available

Associated With nitr6a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013106	Immunoglobulin V-set domain
Family	IPR052051	T cell receptor complex component
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Immunoglobulin domain subtype	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin V-set domain	T cell receptor complex component
UniProtKB:Q3B7R5	InterPro	249

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	nitr6a-001 (1)	Havana	898 nt	Select Tool ZFIN BLAST
mRNA	nitr6a-201 (1) Ensembl	Ensembl	1,439 nt	Select Tool ZFIN BLAST
mRNA	ottdart00000001500 (1)	Havana	898 nt	Select Tool ZFIN BLAST
mRNA	ottdart00000004027 (1)	Havana	750 nt	Select Tool ZFIN BLAST
mRNA	ottdart00000004112 (1)	Havana	898 nt	Select Tool ZFIN BLAST
ncRNA	ottdart00000001561 (1)	Havana	823 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations