Gene

tagln

ID

ZDB-GENE-070912-1

Name

transgelin

Symbol

tagln Nomenclature History

Previous Names

sm22 (1)
sm22alpha-b (1)
zgc:153186

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Is expressed in several structures, including artery; gut; hematopoietic stem cell; smooth muscle; and swim bladder bud. Orthologous to human TAGLN (transgelin).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

20 figures from 15 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With tagln Human Ortholog

No data available

Associated With tagln Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001715	Calponin homology domain
Family	IPR003096	Smooth muscle protein/calponin
Homologous_superfamily	IPR036872	CH domain superfamily
Repeat	IPR000557	Calponin repeat

Domain Details Per Protein

Protein	Length	Calponin homology domain	Calponin repeat	CH domain superfamily	Smooth muscle protein/calponin
UniProtKB:A0A8M9QHD6 InterPro	206
UniProtKB:Q0P4B4 InterPro	199

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	tagln-201 (1) Ensembl	Havana	773 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	tagln-202 (1) Ensembl	Havana	820 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations