ZFIN is now using GRCz12tu for Genomic Data
Gene
vps13c
- ID
- ZDB-GENE-070426-4
- Name
- vacuolar protein sorting 13 homolog C
- Symbol
- vps13c Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in mitochondrion organization; protein retention in Golgi apparatus; and protein targeting to vacuole. Human ortholog(s) of this gene implicated in Parkinson's disease 23. Orthologous to human VPS13C (vacuolar protein sorting 13 homolog C).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from O'Hare et al., 2016
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Parkinson's disease 23 | Alliance | Parkinson disease 23, autosomal recessive, early onset | 616840 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR009543 | Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain |
| Domain | IPR026854 | Vacuolar protein sorting-associated protein 13, N-terminal domain |
| Domain | IPR056747 | VPS13-like, middle region |
| Domain | IPR056748 | Intermembrane lipid transfer protein VPS13-like, C-terminal |
| Family | IPR026847 | Vacuolar protein sorting-associated protein 13 |
Domain Details Per Protein
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
vps13c-201
(1)
|
Ensembl | 13,930 nt | ||
| ncRNA |
vps13c-003
(1)
|
Ensembl | 641 nt | ||
| ncRNA |
vps13c-005
(1)
|
Ensembl | 844 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers
- Comparative Orthology
- Alliance