Gene

rbms3

ID

ZDB-GENE-060929-244

Name

RNA binding motif, single stranded interacting protein

Symbol

rbms3 Nomenclature History

Previous Names

zgc:153698

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Involved in regulation of cartilage development and regulation of transforming growth factor beta receptor signaling pathway. Predicted to localize to ribonucleoprotein complex. Is expressed in several structures, including brain; fin bud; hatching gland; otic vesicle; and tail bud. Orthologous to human RBMS3 (RNA binding motif single stranded interacting protein 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 4 figures from Jayasena et al., 2012
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbms3 Human Ortholog

No data available

Associated With rbms3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034406	RBMS3, RNA recognition motif 2
Family	IPR002343	Paraneoplastic encephalomyelitis antigen
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	Paraneoplastic encephalomyelitis antigen	RBMS3, RNA recognition motif 2	RNA-binding domain superfamily	RNA recognition motif domain
UniProtKB:A0A8M3ATP9 InterPro	397
UniProtKB:F1QGV3 InterPro	415
UniProtKB:A0A8M3B1W9 InterPro	414
UniProtKB:A0A8M3AJD4 InterPro	398
UniProtKB:Q08C34 InterPro	381

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rbms3-202 (1) Ensembl	Havana	1256 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rbms3-203 (1) Ensembl	Havana	548 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rbms3-204 (1) Ensembl	Havana	696 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rbms3-205 (1) Ensembl	Havana	1733 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbms3-003 (1) Ensembl	Havana	727 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbms3-005 (1) Ensembl	Havana	827 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations